As of August 8th, Origin/Mass Effect 3 Released an update. All d3d9.dll based mods for Mass Effect 3 now cause a crash to desktop these mods include Helixmod/FXAA mod/Enb.
A temporary workaround has been discovered by Smarteck. Be sure to check out his thread where he has enhanced textures, improved FXAA/Sharpen, and many other users mods including voice commands(like kinect). Which are all fully compatible with Helix's Mass Effect 3 patch.
Smarteck has been very supportive and helpful to the 3D Vision/Helix Mod community please visit his thread @ http://social.bioware.com/forum/1/topic/368/index/9735492
Updated easier Method(Thanks to ddorpm):
Navigate to your Origin folder
example C:\Program Files (x86)\Origin
Rename IGO32.dll to IGO32.dll.delete
Start Mass Effect 3 and Play.
How to Help:
Create a forum account at MassEffect.com and request them to fix the issue.
Also asking for future 3dvision support wouldn't hurt = )